Selective Bibliography of Vishal Koparde
Bioinformatics and Computer Science Directorate

"Into the Future with caNanoLab: Revitalizing a Unique NCI/FNL Resource"

Wednesday, September 18, 2024

1.  Zahraeifard S, Xiao Z, So JY, Ahad A, Montoya S, Park WY, Sornapudi T, Andohkow T, Read A, Kedei N, Koparde V, Yang H, Lee M, Wong N, Cam M, Wang K, Ruppin E, Luo J, Hollander C, Yang L
Loss of tumor suppressors promotes inflammatory tumor microenvironment and enhances LAG3+T cell mediated immune suppression
Nature Communications 15 (1):5873 Jul 12 2024

2.  Balachandra V, Shrestha RL, Hammond CM, Lin S, Hendriks IA, Sethi SC, Chen L, Sevilla S, Caplen NJ, Chari R, Karpova TS, McKinnon K, Todd MA, Koparde V, Cheng KC, Nielsen ML, Groth A, Basrai MA
DNAJC9 prevents CENP-A mislocalization and chromosomal instability by maintaining the fidelity of histone supply chains
The EMBO journal 43 (11):2166-2197 Jun 2024

3.  Dremel SE, Tagawa T, Koparde VN, Hernandez-Perez C, Arbuckle JH, Kristie TM, Krug LT, Ziegelbauer JM
Interferon induced circRNAs escape herpesvirus host shutoff and suppress lytic infection
EMBO Reports 25 (3):1541-1569 Mar 2024

4.  Harris AR, Panigrahi G, Liu H, Koparde VN, Bailey-Whyte M, Dorsey TH, Yates CC, Ambs S
Chromatin Accessibility Landscape of Human Triple-negative Breast Cancer Cell Lines Reveals Variation by Patient Donor Ancestry
Cancer Research Communications 3 (10):2014-2029 Oct 5 2023

5.  Ramaswami R, Tagawa T, Mahesh G, Serquina A, Koparde V, Lurain K, Dremel S, Li X, Mungale A, Beran A, Ohler ZW, Bassel L, Warner A, Mangusan R, Widell A, Ekwede I, Krug LT, Uldrick TS, Yarchoan R, Ziegelbauer JM
Transcriptional landscape of Kaposi sarcoma tumors identifies unique immunologic signatures and key determinants of angiogenesis
Journal of Translational Medicine 21 (1):653 Sep 22 2023

6.  Gao Y, Wang Y, Chauss D, Villarino AV, Link VM, Nagashima H, Spinner CA, Koparde VN, Bouladoux N, Abers MS, Break TJ, Chopp LB, Park JH, Zhu J, Wiest DL, Leonard WJ, Lionakis MS, O'Shea JJ, Afzali B, Belkaid Y, Lazarevic V
Transcription factor EGR2 controls homing and pathogenicity of T(H)17 cells in the central nervous system
Nature Immunology 24 (8):1331-1344 Aug 2023

7.  Nigam N, Bernard B, Sevilla S, Kim S, Dar MS, Tsai D, Robbins Y, Burkitt K, Sievers C, Allen CT, Bennett RL, Tettey TT, Carter B, Rinaldi L, Lingen MW, Sater H, Edmondson EF, Moshiri A, Saeed A, Cheng H, Luo X, Brennan K, Koparde V, Chen C, Das S, Andresson T, Abdelmaksoud A, Murali M, Sakata S, Takeuchi K, Chari R, Nakamura Y, Uppaluri R, Sunwoo JB, Van Waes C, Licht JD, Hager GL, Saloura V
SMYD3 represses tumor-intrinsic interferon response in HPV-negative squamous cell carcinoma of the head and neck
Cell Reports 42 (7):112823 Jul 25 2023

8.  Tagawa T, Oh D, Dremel S, Mahesh G, Koparde VN, Duncan G, Andresson T, Ziegelbauer JM
A virus-induced circular RNA maintains latent infection of Kaposi's sarcoma herpesvirus
Proceedings of the National Academy of Sciences of the United States of America 120 (6):e2212864120 Feb 7 2023

9.  Ha T, DiPrima M, Koparde V, Jailwala P, Ohnuki H, Feng JX, Palangat M, Larson D, Tosato G
Antisense transcription from lentiviral gene targeting linked to an integrated stress response in colorectal cancer cells
Molecular Therapy Nucleic Acids 28 877-891 Jun 14 2022

10.  Glascock AL, Jimenez NR, Boundy S, Koparde VN, Brooks JP, Edwards DJ, Strauss Iii JF, Jefferson KK, Serrano MG, Buck GA, Fettweis JM
Unique roles of vaginal Megasphaera phylotypes in reproductive health
Microbial Genomics 7 (12):Dec 2021